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IPPS
2010
IEEE
15 years 4 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
ICPP
2006
IEEE
16 years 23 days ago
Parallel Information Extraction on Shared Memory Multi-processor System
Text Mining is one of the best solutions for today and the future’s information explosion. With the development of modern processor technologies, it will be a mass market deskto...
Jiulong Shan, Yurong Chen, Qian Diao, Yimin Zhang
IPPS
2002
IEEE
15 years 11 months ago
Massively Parallel Solutions for Molecular Sequence Analysis
In this paper we present new approaches to high performance protein database scanning on two novel massively parallel architectures to gain supercomputer power at low cost. The ï¬...
Bertil Schmidt, Heiko Schröder, Manfred Schim...
ICDCS
2006
IEEE
16 years 23 days ago
GMP: Distributed Geographic Multicast Routing in Wireless Sensor Networks
In this paper, we propose a novel Geographic Multicast routing Protocol (GMP) for wireless sensor networks1 . The proposed protocol is fully distributed and stateless. Given a set...
Shibo Wu, K. Selçuk Candan
SPAA
1994
ACM
15 years 10 months ago
An Optical Simulation of Shared Memory
We present a work-optimal randomized algorithm for simulating a shared memory machine (pram) on an optical communication parallel computer (ocpc). The ocpc model is motivated by t...
Leslie Ann Goldberg, Yossi Matias, Satish Rao