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ICPPW
2009
IEEE
15 years 4 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
SPAA
1993
ACM
15 years 10 months ago
Asymptotically Tight Bounds for Performing BMMC Permutations on Parallel Disk Systems
d Abstract) Thomas H. Cormen Leonard F. Wisniewski Department of Mathematics and Computer Science Dartmouth College We give asymptotically equal lower and upper bounds for the num...
Thomas H. Cormen, Leonard F. Wisniewski
HPCS
2005
IEEE
16 years 8 days ago
Parallel Lattice Implementation for Option Pricing under Mixed State-Dependent Volatility Models
— With the principal goal of developing an alternative, relatively simple and tractable pricing framework for accurately reproducing a market implied volatility surface, this pap...
Giuseppe Campolieti, Roman Makarov
ASAP
2007
IEEE
122views Hardware» more  ASAP 2007»
16 years 1 months ago
Parallelizing HMMER for Hardware Acceleration on FPGAs
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
Steven Derrien, Patrice Quinton
HPDC
2002
IEEE
15 years 11 months ago
Distributed Computing with Load-Managed Active Storage
One approach to high-performance processing of massive data sets is to incorporate computation into storage systems. Previous work has shown that this active storage model is effe...
Rajiv Wickremesinghe, Jeffrey S. Chase, Jeffrey Sc...