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BMCBI
2002
137views more  BMCBI 2002»
15 years 6 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
ASPLOS
2011
ACM
14 years 10 months ago
On-the-fly elimination of dynamic irregularities for GPU computing
The power-efficient massively parallel Graphics Processing Units (GPUs) have become increasingly influential for scientific computing over the past few years. However, their ef...
Eddy Z. Zhang, Yunlian Jiang, Ziyu Guo, Kai Tian, ...
IWOMP
2007
Springer
16 years 21 days ago
Supporting OpenMP on Cell
The Cell processor is a heterogeneous multi-core processor with one Power Processing Engine (PPE) core and eight Synergistic Processing Engine (SPE) cores. Each SPE has a directly...
Kevin O'Brien, Kathryn M. O'Brien, Zehra Sura, Ton...
ASPLOS
2009
ACM
16 years 7 months ago
Capo: a software-hardware interface for practical deterministic multiprocessor replay
While deterministic replay of parallel programs is a powerful technique, current proposals have shortcomings. Specifically, software-based replay systems have high overheads on mu...
Pablo Montesinos, Matthew Hicks, Samuel T. King, J...
SPAA
2009
ACM
16 years 7 months ago
Towards transactional memory semantics for C++
Transactional memory (TM) eliminates many problems associated with lock-based synchronization. Over recent years, much progress has been made in software and hardware implementati...
Tatiana Shpeisman, Ali-Reza Adl-Tabatabai, Robert ...