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BMCBI
2011
15 years 1 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
CF
2009
ACM
16 years 1 months ago
Scheduling dynamic parallelism on accelerators
Resource management on accelerator based systems is complicated by the disjoint nature of the main CPU and accelerator, which involves separate memory hierarhcies, different degr...
Filip Blagojevic, Costin Iancu, Katherine A. Yelic...
CGO
2004
IEEE
15 years 10 months ago
Custom Data Layout for Memory Parallelism
In this paper, we describe a generalized approach to deriving a custom data layout in multiple memory banks for array-based computations, to facilitate high-bandwidth parallel mem...
Byoungro So, Mary W. Hall, Heidi E. Ziegler
IJHPCA
2008
131views more  IJHPCA 2008»
15 years 6 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
IJPP
2006
145views more  IJPP 2006»
15 years 6 months ago
Deterministic Parallel Processing
Abstract. In order to address the problems faced in the wireless communications domain, picoChip has devised the picoArrayTM . The picoArrayTM is a tiled-processor architecture, co...
Gajinder Panesar, Daniel Towner, Andrew Duller, Al...