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PPOPP
2012
ACM
14 years 2 months ago
Internally deterministic parallel algorithms can be fast
The virtues of deterministic parallelism have been argued for decades and many forms of deterministic parallelism have been described and analyzed. Here we are concerned with one ...
Guy E. Blelloch, Jeremy T. Fineman, Phillip B. Gib...
BMCBI
2008
146views more  BMCBI 2008»
15 years 7 months ago
Rank-based edge reconstruction for scale-free genetic regulatory networks
Background: The reconstruction of genetic regulatory networks from microarray gene expression data has been a challenging task in bioinformatics. Various approaches to this proble...
Guanrao Chen, Peter Larsen, Eyad Almasri, Yang Dai
BMCBI
2010
190views more  BMCBI 2010»
15 years 7 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
ANSS
1991
IEEE
15 years 10 months ago
A provably correct, non-deadlocking parallel event simulation algorithm
This paper first summerizes and then presents a formal proof to a new conservative deadlock-free algorithm, YADDES [l], for asynchronous discrete event simulation. The proof not o...
Meng-Lin Yu, Sumit Ghosh, Erik DeBenedictis
PPSC
1997
15 years 8 months ago
A Coarse-Grain Parallel Formulation of Multilevel k-way Graph Partitioning Algorithm
In this paper we present a parallel formulation of a multilevel k-way graph partitioning algorithm, that is particularly suited for message-passing libraries that have high latenc...
George Karypis, Vipin Kumar