Abstract. In this paper we give a complete formalization of a new computability model of a distributed parallel type which is inspired by some basic features of living cells: trans...
We propose a low overhead, on-line memory monitoring scheme utilizing a set of novel hardware counters. The counters act like pressure gauges indicating the marginal gain in the n...
Collective operations and non-blocking point-to-point operations are two important parts of MPI that each provide important performance and programmability benefits. Although non...
We study the problem of asymptotically reducing the runtime of serial computations with circuits of polynomial size. We give an algorithmic size-depth tradeoff for parallelizing ...
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...