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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
16 years 10 days ago
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Yuheng Li, Mario Lauria, Ralf Bundschuh
CCGRID
2005
IEEE
16 years 10 days ago
Scaling NFSv4 with parallel file systems
Large grid installations require global access to massive data stores. Parallel file systems give high throughput within a LAN, but cross-site data transfers lack seamless integra...
Dean Hildebrand, Peter Honeyman
CCGRID
2005
IEEE
16 years 10 days ago
View-oriented update protocol with integrated diff for view-based consistency
This paper proposes a View-Oriented Update Protocol with Integrated Diff for efficient implementation of a View-based Consistency model which supports a novel View-Oriented Paral...
Zhiyi Huang, Martin K. Purvis, Paul Werstein
CCGRID
2005
IEEE
16 years 10 days ago
Empirical evaluation of shared parallel execution on independently scheduled clusters
Parallel machines are typically space shared, or time shared such that only one application executes on a group of nodes at any given time. It is generally assumed that executing ...
M. Ghanesh, S. Kumar, Jaspal Subhlok
CGO
2005
IEEE
16 years 10 days ago
Superword-Level Parallelism in the Presence of Control Flow
In this paper, we describe how to extend the concept of superword-level parallelization (SLP), used for multimedia extension architectures, so that it can be applied in the presen...
Jaewook Shin, Mary W. Hall, Jacqueline Chame