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» PAPER - Accelerating parallel evaluations of ROCS
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HOTI
2005
IEEE
16 years 3 days ago
Performance Characterization of a 10-Gigabit Ethernet TOE
Though traditional Ethernet based network architectures such as Gigabit Ethernet have suffered from a huge performance difference as compared to other high performance networks (e...
Wu-chun Feng, Pavan Balaji, C. Baron, Laxmi N. Bhu...
ICSM
2007
IEEE
16 years 24 days ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
BMCBI
2011
14 years 10 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
ICS
1999
Tsinghua U.
15 years 10 months ago
The scalability of multigrain systems
Researchers have recently proposed coupling small- to mediumscale multiprocessors to build large-scale shared memory machines, known as multigrain shared memory systems. Multigrai...
Donald Yeung
ICSE
2009
IEEE-ACM
16 years 7 months ago
Refactoring sequential Java code for concurrency via concurrent libraries
Parallelizing existing sequential programs to run efficiently on multicores is hard. The Java 5 package java.util.concurrent (j.u.c.) supports writing concurrent programs: much of...
Danny Dig, John Marrero, Michael D. Ernst