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BMCBI
2010
154views more  BMCBI 2010»
15 years 6 months ago
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Background: A major goal of molecular biology is determining the mechanisms that control the transcription of genes. Motif Enrichment Analysis (MEA) seeks to determine which DNA-b...
Robert C. McLeay, Timothy L. Bailey
GLVLSI
2005
IEEE
124views VLSI» more  GLVLSI 2005»
16 years 4 days ago
A first look at the interplay of code reordering and configurable caches
The instruction cache is a popular target for optimizations of microprocessor-based systems because of the cache’s high impact on system performance and power, and because of th...
Ann Gordon-Ross, Frank Vahid, Nikil Dutt
BIOINFORMATICS
2007
190views more  BIOINFORMATICS 2007»
15 years 6 months ago
Towards clustering of incomplete microarray data without the use of imputation
Motivation: Clustering technique is used to find groups of genes that show similar expression patterns under multiple experimental conditions. Nonetheless, the results obtained by...
Dae-Won Kim, Ki Young Lee, Kwang H. Lee, Doheon Le...
PLDI
2003
ACM
15 years 11 months ago
Points-to analysis using BDDs
This paper reports on a new approach to solving a subset-based points-to analysis for Java using Binary Decision Diagrams (BDDs). In the model checking community, BDDs have been s...
Marc Berndl, Ondrej Lhoták, Feng Qian, Laur...
IWOMP
2009
Springer
16 years 1 months ago
Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs
The UTS benchmark is used to evaluate task parallelism in OpenMP 3.0 as implemented in a number of recently released compilers and run-time systems. UTS performs parallel search of...
Stephen Olivier, Jan Prins