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» Optimizing for parallelism and data locality
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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
16 years 1 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
ISBI
2004
IEEE
16 years 7 months ago
Compact Support Radial Basis Functions for Soft Tissue Deformation
We describe the use of compact support radial basis functions (CSRBFs) for simulation of soft tissue deformation. CSRBFs allow surface and volumetric deformations to be computed i...
Mark P. Wachowiak, Xiaogang Wang, Aaron Fenster, T...
JUCS
2008
148views more  JUCS 2008»
15 years 6 months ago
An Optimization of CDN Using Efficient Load Distribution and RADS Caching Algorithm
: Nowadays, while large-sized multimedia objects are becoming very popular throughout the Internet, one of the important issues appears to be the acceleration of content delivery n...
Yun Ji Na, Sarvar R. Abdullaev, Franz I. S. Ko
TOG
2012
230views Communications» more  TOG 2012»
13 years 9 months ago
Decoupling algorithms from schedules for easy optimization of image processing pipelines
Using existing programming tools, writing high-performance image processing code requires sacrificing readability, portability, and modularity. We argue that this is a consequenc...
Jonathan Ragan-Kelley, Andrew Adams, Sylvain Paris...
GECCO
2004
Springer
105views Optimization» more  GECCO 2004»
16 years 11 hour ago
An Enhanced Genetic Algorithm for DNA Sequencing by Hybridization with Positive and Negative Errors
Abstract. This paper describes a genetic algorithm for the DNA sequencing problem. The algorithm allows the input spectrum to contain both positive and negative errors as could be ...
Thang Nguyen Bui, Waleed A. Youssef