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RECOMB
2006
Springer
16 years 7 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
RECOMB
2005
Springer
16 years 7 months ago
Alignment of Optical Maps
We introduce a new scoring method for calculation of alignments of optical maps. Missing cuts, false cuts, and sizing errors present in optical maps are addressed by our alignment...
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwar...
RECOMB
2004
Springer
16 years 7 months ago
Aligning alignments exactly
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Dean Starrett
STOC
2003
ACM
193views Algorithms» more  STOC 2003»
16 years 7 months ago
Space efficient dynamic stabbing with fast queries
In dynamic stabbing, we operate on a dynamic set of intervals. A stabbing query asks for an interval containing a given point. This basic problem encodes problems such as method l...
Mikkel Thorup
STOC
2001
ACM
151views Algorithms» more  STOC 2001»
16 years 7 months ago
On the cell probe complexity of membership and perfect hashing
We study two fundamental static data structure problems, membership and perfect hashing, in Yao's cell probe model. The first space and bit probe optimal worst case upper bou...
Rasmus Pagh
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