The acceleration of molecular dynamics (MD) simulations using high performance reconfigurable computing (HPRC) has been much studied. Given the intense competition from multicore...
Reconfigurable architectures enable the hardware function to be implemented by the user and, due to its characteristics, have been used in many areas, including Bioinformatics. One...
We present a new deterministic sorting algorithm that interleaves the partitioning of a sample sort with merging. Sequentially, it sorts n elements in O(n log n) time cache-oblivi...
Heterogeneous multi-core and streaming architectures such as the GPU, Cell, ClearSpeed, and Imagine processors have better power/ performance ratios and memory bandwidth than tradi...
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...