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FPL
2009
Springer
162views Hardware» more  FPL 2009»
15 years 9 months ago
Efficient particle-pair filtering for acceleration of molecular dynamics simulation
The acceleration of molecular dynamics (MD) simulations using high performance reconfigurable computing (HPRC) has been much studied. Given the intense competition from multicore...
Matt Chiu, Martin C. Herbordt
ARC
2008
Springer
126views Hardware» more  ARC 2008»
15 years 8 months ago
DNA Physical Mapping on a Reconfigurable Platform
Reconfigurable architectures enable the hardware function to be implemented by the user and, due to its characteristics, have been used in many areas, including Bioinformatics. One...
Adriano Idalgo, Nahri Moreano
ICALP
2010
Springer
15 years 8 months ago
Resource Oblivious Sorting on Multicores
We present a new deterministic sorting algorithm that interleaves the partitioning of a sample sort with merging. Sequentially, it sorts n elements in O(n log n) time cache-oblivi...
Richard Cole, Vijaya Ramachandran
CC
2008
Springer
144views System Software» more  CC 2008»
15 years 8 months ago
Control Flow Emulation on Tiled SIMD Architectures
Heterogeneous multi-core and streaming architectures such as the GPU, Cell, ClearSpeed, and Imagine processors have better power/ performance ratios and memory bandwidth than tradi...
Ghulam Lashari, Ondrej Lhoták, Michael McCo...
CIBCB
2005
IEEE
15 years 8 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos