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» Ontology: The Discipline and the Tool
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EKAW
2004
Springer
15 years 11 months ago
ConEditor: Tool to Input and Maintain Constraints
We present a tool which helps domain experts capture and maintain constraints. The tool displays parts of an ontology (as classes, sub-classes and properties) in the form of a tree...
Suraj Ajit, Derek H. Sleeman, David W. Fowler, Dav...
BMCBI
2010
167views more  BMCBI 2010»
15 years 6 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...
BMCBI
2006
135views more  BMCBI 2006»
15 years 6 months ago
TF Target Mapper: A BLAST search tool for the identification of Transcription Factor target genes
Background: In the current era of high throughput genomics a major challenge is the genome-wide identification of target genes for specific transcription factors. Chromatin immuno...
Sebastiaan Horsman, Michael J. Moorhouse, Victor C...
BMCBI
2007
177views more  BMCBI 2007»
15 years 6 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
BMCBI
2008
153views more  BMCBI 2008»
15 years 6 months ago
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Background: The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 1...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...