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BMCBI
2010
82views more  BMCBI 2010»
15 years 6 months ago
Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition
Background: Metabolic pathway is a highly regulated network consisting of many metabolic reactions involving substrates, enzymes, and products, where substrates can be transformed...
Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou...
BMCBI
2007
171views more  BMCBI 2007»
15 years 6 months ago
Classification of microarray data using gene networks
Background: Microarrays have become extremely useful for analysing genetic phenomena, but establishing a relation between microarray analysis results (typically a list of genes) a...
Franck Rapaport, Andrei Zinovyev, Marie Dutreix, E...
STOC
2007
ACM
137views Algorithms» more  STOC 2007»
16 years 6 months ago
Testing k-wise and almost k-wise independence
In this work, we consider the problems of testing whether a distribution over {0, 1}n is k-wise (resp. ( , k)-wise) independent using samples drawn from that distribution. For the...
Noga Alon, Alexandr Andoni, Tali Kaufman, Kevin Ma...
SIGMOD
2004
ACM
184views Database» more  SIGMOD 2004»
16 years 6 months ago
CORDS: Automatic Discovery of Correlations and Soft Functional Dependencies
The rich dependency structure found in the columns of real-world relational databases can be exploited to great advantage, but can also cause query optimizers--which usually assum...
Ihab F. Ilyas, Volker Markl, Peter J. Haas, Paul B...
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala