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BMCBI
2008
103views more  BMCBI 2008»
15 years 7 months ago
Parameter estimation for robust HMM analysis of ChIP-chip data
Background: Tiling arrays are an important tool for the study of transcriptional activity, proteinDNA interactions and chromatin structure on a genome-wide scale at high resolutio...
Peter Humburg, David Bulger, Glenn Stone
BMCBI
2005
145views more  BMCBI 2005»
15 years 6 months ago
CAGER: classification analysis of gene expression regulation using multiple information sources
Background: Many classification approaches have been applied to analyzing transcriptional regulation of gene expressions. These methods build models that can explain a gene's...
Jianhua Ruan, Weixiong Zhang
DAC
2003
ACM
16 years 7 months ago
Analog and RF circuit macromodels for system-level analysis
Design and validation of mixed-signal integrated systems require evel model abstractions. Generalized Volterra series based models have been successfully applied for analog and RF...
Xin Li, Peng Li, Yang Xu, Lawrence T. Pileggi
ESAW
2004
Springer
16 years 6 days ago
Techniques for Analysis and Calibration of Multi-agent Simulations
In this paper we present analysis and calibration techniques that exploit knowledge about a multi agent society in order to calibrate the system parameters of a corresponding socie...
Manuel Fehler, Franziska Klügl, Frank Puppe
BMCBI
2005
122views more  BMCBI 2005»
15 years 6 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo