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BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2007
139views more  BMCBI 2007»
15 years 6 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
COLT
2005
Springer
15 years 12 months ago
General Polynomial Time Decomposition Algorithms
We present a general decomposition algorithm that is uniformly applicable to every (suitably normalized) instance of Convex Quadratic Optimization and efficiently approaches an o...
Nikolas List, Hans-Ulrich Simon
ADHOC
2006
97views more  ADHOC 2006»
15 years 6 months ago
A probabilistic algorithm for efficient and robust data propagation in wireless sensor networks
We study the problem of data propagation in sensor networks, comprised of a large number of very small and low-cost nodes, capable of sensing, communicating and computing. The dis...
Ioannis Chatzigiannakis, Tassos Dimitriou, Sotiris...
TVCG
2012
176views Hardware» more  TVCG 2012»
13 years 8 months ago
Point-Based Manifold Harmonics
—This paper proposes an algorithm to build a set of orthogonal Point-Based Manifold Harmonic Bases (PB-MHB) for spectral analysis over point-sampled manifold surfaces. To ensure ...
Yang Liu, Balakrishnan Prabhakaran, Xiaohu Guo