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BMCBI
2010
142views more  BMCBI 2010»
15 years 6 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
PR
2008
206views more  PR 2008»
15 years 6 months ago
A study of graph spectra for comparing graphs and trees
The spectrum of a graph has been widely used in graph theory to characterise the properties of a graph and extract information from its structure. It has also been employed as a g...
Richard C. Wilson, Ping Zhu
BMCBI
2005
100views more  BMCBI 2005»
15 years 6 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
CPC
1999
105views more  CPC 1999»
15 years 6 months ago
Total Path Length For Random Recursive Trees
Total path length, or search cost, for a rooted tree is defined as the sum of all root-to-node distances. Let Tn be the total path length for a random recursive tree of order n. M...
Robert P. Dobrow, James Allen Fill
WEA
2007
Springer
114views Algorithms» more  WEA 2007»
16 years 17 days ago
Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data
Abstract. A major task in evolutionary biology is to determine the ancestral relationships among the known species, a process generally referred as phylogenetic reconstruction. In ...
Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang