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» On the Structure of Low Sets
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KRMED
2004
15 years 8 months ago
Towards a computational paradigm for biomedical structure
The symbolic representation of the physical structure of living organisms needs an ontologically well-founded and logically sound approach so that formal reasoning can adequately ...
Stefan Schulz, Udo Hahn
BMCBI
2008
142views more  BMCBI 2008»
15 years 6 months ago
RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database
Background: The ability to access, search and analyse secondary structures of a large set of known RNA molecules is very important for deriving improved RNA energy models, for eva...
Mirela Andronescu, Vera Bereg, Holger H. Hoos, Ann...
BIOINFORMATICS
2006
111views more  BIOINFORMATICS 2006»
15 years 6 months ago
Multiple Alignment of protein structures and sequences for VMD
Multiple Alignment is a new interface for performing and analyzing multiple protein structure alignments. It enables viewing levels of sequence and structure similarity on the ali...
John Eargle, Dan Wright, Zaida Luthey-Schulten
JCO
2007
149views more  JCO 2007»
15 years 6 months ago
A 2-approximation for the preceding-and-crossing structured 2-interval pattern problem
The 2-interval pattern problem over its various models and restrictions was proposed by Vialette (2004) for the application of RNA secondary structure prediction. We present an O(n...
Minghui Jiang
COLING
2002
15 years 6 months ago
An Indexing Scheme for Typed Feature Structures
This paper describes an indexing substrate for typed feature structures (ISTFS), which is an efficient retrieval engine for typed feature structures. Given a set of typed feature ...
Takashi Ninomiya, Takaki Makino, Jun-ichi Tsujii