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CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 10 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
BMCBI
2007
142views more  BMCBI 2007»
15 years 6 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
BMCBI
2010
163views more  BMCBI 2010»
15 years 6 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek
BMCBI
2006
159views more  BMCBI 2006»
15 years 6 months ago
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures
Background: The structure of proteins may change as a result of the inherent flexibility of some protein regions. We develop and explore probabilistic machine learning methods for...
Mikael Bodén, Zheng Yuan, Timothy L. Bailey
WADS
2009
Springer
291views Algorithms» more  WADS 2009»
16 years 1 months ago
On the Power of the Semi-Separated Pair Decomposition
Abstract. A Semi-Separated Pair Decomposition (SSPD), with parameter s > 1, of a set S ⊂ Rd is a set {(Ai, Bi)} of pairs of subsets of S such that for each i, there are balls ...
Mohammad Ali Abam, Paz Carmi, Mohammad Farshi, Mic...