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» On the Optimality of Spiral Search
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CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...
BIRD
2008
Springer
15 years 8 months ago
Efficient Seeding Techniques for Protein Similarity Search
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
Mikhail A. Roytberg, Anna Gambin, Laurent No&eacut...
DATESO
2007
157views Database» more  DATESO 2007»
15 years 8 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
IJCAI
2007
15 years 8 months ago
A Heuristic Search Approach to Planning with Temporally Extended Preferences
In this paper we propose a suite of techniques for planning with temporally extended preferences (TEPs). To this end, we propose a method for compiling TEP planning problems into ...
Jorge A. Baier, Fahiem Bacchus, Sheila A. McIlrait...
NIPS
2008
15 years 8 months ago
Dynamic visual attention: searching for coding length increments
A visual attention system should respond placidly when common stimuli are presented, while at the same time keep alert to anomalous visual inputs. In this paper, a dynamic visual ...
Xiaodi Hou, Liqing Zhang