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» On the Implementation of Dynamic Patterns
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BMCBI
2002
108views more  BMCBI 2002»
15 years 6 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
ACST
2006
15 years 8 months ago
PDC: Pattern discovery with confidence in DNA sequences
Pattern discovery in DNA sequences is one of the most challenging tasks in molecular biology and computer science. The main goal of pattern discovery in DNA sequences is to identi...
Yi Lu, Shiyong Lu, Farshad Fotouhi, Yan Sun, Zijia...
COMPUTER
2002
89views more  COMPUTER 2002»
15 years 6 months ago
A Pattern for Softcoded Values
rs use models or abstractions that hide low-level implementation details. Various kinds of representations such as data models, state-transition models, and dataflow models can hel...
Michael R. Blaha, Cheryl Smith
EUROPLOP
2006
15 years 8 months ago
Meeting real-time constraints using "Sandwich Delays"
This short paper is concerned with the use of patterns to support the development of software for reliable, resource-constrained, embedded systems. The paper introduces one new pa...
Michael J. Pont, Susan Kurian, Ricardo Bautistar
BMCBI
2008
161views more  BMCBI 2008»
15 years 6 months ago
Inferring gene expression dynamics via functional regression analysis
Background: Temporal gene expression profiles characterize the time-dynamics of expression of specific genes and are increasingly collected in current gene expression experiments....
Hans-Georg Müller, Jeng-Min Chiou, Xiaoyan Le...