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BMCBI
2008
163views more  BMCBI 2008»
15 years 6 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2006
186views more  BMCBI 2006»
15 years 6 months ago
Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method
Background: Quantitative simultaneous monitoring of the expression levels of thousands of genes under various experimental conditions is now possible using microarray experiments....
Xiaoli Li, Yin-Chet Tan, See-Kiong Ng
BMCBI
2005
124views more  BMCBI 2005»
15 years 6 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
ICDE
2003
IEEE
209views Database» more  ICDE 2003»
16 years 7 months ago
An Evaluation of Regular Path Expressions with Qualifiers against XML Streams
This paper presents SPEX, a streamed and progressive evaluation of regular path expressions with XPath-like qualifiers against XML streams. SPEX proceeds as follows. An expression...
Dan Olteanu, François Bry, Tobias Kiesling
RECOMB
2002
Springer
16 years 6 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...