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» On the Expressiveness and Complexity of ATL
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BMCBI
2007
128views more  BMCBI 2007»
15 years 6 months ago
Model order selection for bio-molecular data clustering
Background: Cluster analysis has been widely applied for investigating structure in bio-molecular data. A drawback of most clustering algorithms is that they cannot automatically ...
Alberto Bertoni, Giorgio Valentini
JAR
2006
236views more  JAR 2006»
15 years 6 months ago
Deciding Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
JBCB
2007
161views more  JBCB 2007»
15 years 6 months ago
On Cooperative Quasi-Equilibrium Models of transcriptional Regulation
Mechanistic models for transcriptional regulation are derived using the methods of equilibrium statistical mechanics, to model equilibrating processes that occur at a fast time sc...
Eric Mjolsness
BMCBI
2011
15 years 29 days ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
COMPGEOM
2011
ACM
14 years 10 months ago
Deconstructing approximate offsets
We consider the offset-deconstruction problem: Given a polygonal shape Q with n vertices, can it be expressed, up to a tolerance ε in Hausdorff distance, as the Minkowski sum o...
Eric Berberich, Dan Halperin, Michael Kerber, Roza...