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» On the Complexity of Universal Programs
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BMCBI
2007
102views more  BMCBI 2007»
15 years 6 months ago
Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Background: The number of algorithms available to predict ligand-protein interactions is large and ever-increasing. The number of test cases used to validate these methods is usua...
Luis A. Diago, Persy Morell, Longendri Aguilera, E...
KBSE
2007
IEEE
16 years 17 days ago
Assertion-based repair of complex data structures
Programmers have long used assertions to characterize properties of code. An assertion violation signals a corruption in the program state. At such a state, it is standard to term...
Bassem Elkarablieh, Ivan Garcia, Yuk Lai Suen, Sar...
VMCAI
2005
Springer
15 years 11 months ago
On the Complexity of Error Explanation
When a system fails to satisfy its specification, the model checker produces an error trace (or counter-example) that demonstrates an undesirable behavior, which is then used in d...
Nirman Kumar, Viraj Kumar, Mahesh Viswanathan
ESOP
2001
Springer
15 years 10 months ago
On the Complexity of Constant Propagation
Constant propagation (CP) is one of the most widely used optimizations in practice (cf. [9]). Intuitively, it addresses the problem of statically detecting whether an expression al...
Markus Müller-Olm, Oliver Rüthing
BMCBI
2004
196views more  BMCBI 2004»
15 years 6 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar