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» On the Complexity of Hardness Amplification
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POPL
2005
ACM
16 years 6 months ago
Transition predicate abstraction and fair termination
on Predicate Abstraction and Fair Termination Andreas Podelski Andrey Rybalchenko Max-Planck-Institut f?ur Informatik Saarbr?ucken, Germany Predicate abstraction is the basis of m...
Andreas Podelski, Andrey Rybalchenko
POPL
2004
ACM
16 years 6 months ago
Parsing expression grammars: a recognition-based syntactic foundation
For decades we have been using Chomsky's generative system of grammars, particularly context-free grammars (CFGs) and regular expressions (REs), to express the syntax of prog...
Bryan Ford
RECOMB
2006
Springer
16 years 6 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2004
Springer
16 years 6 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
STOC
2007
ACM
137views Algorithms» more  STOC 2007»
16 years 6 months ago
Testing k-wise and almost k-wise independence
In this work, we consider the problems of testing whether a distribution over {0, 1}n is k-wise (resp. ( , k)-wise) independent using samples drawn from that distribution. For the...
Noga Alon, Alexandr Andoni, Tali Kaufman, Kevin Ma...