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RECOMB
2006
Springer
16 years 6 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2002
Springer
16 years 6 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
PODS
2006
ACM
196views Database» more  PODS 2006»
16 years 6 months ago
The containment problem for REAL conjunctive queries with inequalities
Query containment is a fundamental algorithmic problem in database query processing and optimization. Under set semantics, the query-containment problem for conjunctive queries ha...
T. S. Jayram, Phokion G. Kolaitis, Erik Vee
SODA
2010
ACM
149views Algorithms» more  SODA 2010»
16 years 3 months ago
Sharp kernel clustering algorithms and their associated Grothendieck inequalities
abstract Subhash Khot Assaf Naor In the kernel clustering problem we are given a (large) n ? n symmetric positive semidefinite matrix A = (aij) with n i=1 n j=1 aij = 0 and a (sma...
Subhash Khot, Assaf Naor
SODA
2010
ACM
169views Algorithms» more  SODA 2010»
16 years 3 months ago
Efficiently Decodable Non-adaptive Group Testing
We consider the following "efficiently decodable" nonadaptive group testing problem. There is an unknown string x {0, 1}n with at most d ones in it. We are allowed to t...
Piotr Indyk, Hung Q. Ngo, Atri Rudra