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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
15 years 6 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
ADHOC
2005
95views more  ADHOC 2005»
15 years 6 months ago
Planar graph routing on geographical clusters
Geographic routing protocols base their forwarding decisions on the location of the current device, its neighbors, and the packets destination. Early proposed heuristic greedy rou...
Hannes Frey, Daniel Görgen
FM
2006
Springer
146views Formal Methods» more  FM 2006»
15 years 10 months ago
Formal Modeling of Communication Protocols by Graph Transformation
Formal modeling is a crucial first step in the analysis of safety critical communication protocols such as IP Telephony. These protocols are notoriously resistant to formal modelin...
Zarrin Langari, Richard J. Trefler
EDBT
2010
ACM
164views Database» more  EDBT 2010»
15 years 9 months ago
Techniques for efficiently querying scientific workflow provenance graphs
A key advantage of scientific workflow systems over traditional scripting approaches is their ability to automatically record data and process dependencies introduced during workf...
Manish Kumar Anand, Shawn Bowers, Bertram Ludä...
BMCBI
2008
149views more  BMCBI 2008»
15 years 6 months ago
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
Background: Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach ...
Antti Airola, Sampo Pyysalo, Jari Björne, Tap...