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» On Timed Models of Gene Networks
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RECOMB
2008
Springer
16 years 7 months ago
Perfect DCJ Rearrangement
We study the problem of transforming a multichromosomal genome into another using Double-Cut-and-Join (DCJ) operations. We introduce the notion of DCJ scenario that does not break ...
Sèverine Bérard, Annie Chateau, Cedr...
ICPP
2009
IEEE
16 years 1 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
ICASSP
2007
IEEE
16 years 29 days ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
BMCBI
2004
81views more  BMCBI 2004»
15 years 6 months ago
Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis
Background: Mutations in rpoB, the gene encoding the subunit of DNA-dependent RNA polymerase, are associated with rifampin resistance in Mycobacterium tuberculosis. Several studi...
Michael P. Cummings, Mark R. Segal
180
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PERCOM
2008
ACM
15 years 6 months ago
An application framework for mobile, context-aware trails
In this paper 1 we describe the design, implementation and evaluation of a software framework that supports the development of mobile, context-aware trails-based applications. A t...
Cormac Driver, Siobhán Clarke