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» On Querying Ontologies and Databases
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KCAP
2009
ACM
16 years 1 months ago
Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experim
Curating information from the literature for storage in databases is a crucial task in biological research, and many groups assign a particular person or team to that process. We ...
Gully A. P. C. Burns, Thomas A. Russ
ER
2007
Springer
130views Database» more  ER 2007»
16 years 26 days ago
Towards Automated Reasoning on ORM Schemes
The goal of this article is to formalize Object Role Modeling (ORM) using the DLR description logic. This would enable automated reasoning on the formal properties of ORM diagrams,...
Mustafa Jarrar
BMCBI
2008
147views more  BMCBI 2008»
15 years 6 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...
BMCBI
2006
133views more  BMCBI 2006»
15 years 6 months ago
An integrated approach to the prediction of domain-domain interactions
Background: The development of high-throughput technologies has produced several large scale protein interaction data sets for multiple species, and significant efforts have been ...
Hyunju Lee, Minghua Deng, Fengzhu Sun, Ting Chen
JBI
2007
120views Bioinformatics» more  JBI 2007»
15 years 6 months ago
Measures of semantic similarity and relatedness in the biomedical domain
Measures of semantic similarity between concepts are widely used in Natural Language Processing. In this article, we show how six existing domain-independent measures can be adapt...
Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Pa...
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