We present the Visual Code Navigator, a set of three interrelated visual tools that we developed for exploring large source code software projects from three different perspective...
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
We consider the (1+λ) evolution strategy, an evolutionary algorithm for minimization in Rn , using isotropic mutations. Thus, for instance, Gaussian mutations adapted by the 1/5-r...
Computing consensus trees amounts to finding a single tree that summarizes a collection of trees. Three evolutionary algorithms are defined for this problem, featuring characteri...