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BMCBI
2007
233views more  BMCBI 2007»
15 years 6 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2008
211views more  BMCBI 2008»
15 years 6 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
CORR
2010
Springer
128views Education» more  CORR 2010»
15 years 6 months ago
A Performance Study of GA and LSH in Multiprocessor Job Scheduling
Multiprocessor task scheduling is an important and computationally difficult problem. This paper proposes a comparison study of genetic algorithm and list scheduling algorithm. Bo...
S. R. Vijayalakshmi, G. Padmavathi
CORR
2008
Springer
91views Education» more  CORR 2008»
15 years 6 months ago
A Logical Model and Data Placement Strategies for MEMS Storage Devices
MEMS storage devices are new non-volatile secondary storages that have outstanding advantages over magnetic disks. MEMS storage devices, however, are much different from magnetic ...
Yi-Reun Kim, Kyu-Young Whang, Min-Soo Kim 0002, Il...
DEBU
2010
126views more  DEBU 2010»
15 years 6 months ago
GeoSIM: A Geospatial Data Collection System for Participatory Urban Texture Documentation
Participatory texture documentation (PTD) is a geospatial data collection process in which a group of users (dedicated individuals and/or general public) with camera-equipped mobi...
Farnoush Banaei Kashani, Houtan Shirani-Mehr, Bei ...