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BMCBI
2010
116views more  BMCBI 2010»
15 years 6 months ago
A hybrid approach to protein folding problem integrating constraint programming with local search
Background: The protein folding problem remains one of the most challenging open problems in computational biology. Simplified models in terms of lattice structure and energy func...
Abu Zafer M. Dayem Ullah, Kathleen Steinhöfel
BMCBI
2008
106views more  BMCBI 2008»
15 years 6 months ago
Identification of hot-spot residues in protein-protein interactions by computational docking
Background: The study of protein-protein interactions is becoming increasingly important for biotechnological and therapeutic reasons. We can define two major areas therein: the s...
Solène Grosdidier, Juan Fernández-Re...
BMCBI
2007
112views more  BMCBI 2007»
15 years 6 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...
CORR
2006
Springer
119views Education» more  CORR 2006»
15 years 6 months ago
Network Inference from Co-Occurrences
The study of networked systems is an emerging field, impacting almost every area of engineering and science, including the important domains of communication systems, biology, soc...
Michael Rabbat, Mário A. T. Figueiredo, Rob...
NAR
2008
204views more  NAR 2008»
15 years 6 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata