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RECOMB
2007
Springer
16 years 7 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...
RECOMB
2005
Springer
16 years 7 months ago
Alignment of Optical Maps
We introduce a new scoring method for calculation of alignments of optical maps. Missing cuts, false cuts, and sizing errors present in optical maps are addressed by our alignment...
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwar...
RECOMB
2003
Springer
16 years 7 months ago
Combining phylogenetic and hidden Markov models in biosequence analysis
A few models have appeared in recent years that consider not only the way substitutions occur through evolutionary history at each site of a genome, but also the way the process c...
Adam C. Siepel, David Haussler
SIGMOD
2007
ACM
156views Database» more  SIGMOD 2007»
16 years 7 months ago
JouleSort: a balanced energy-efficiency benchmark
The energy efficiency of computer systems is an important concern in a variety of contexts. In data centers, reducing energy use improves operating cost, scalability, reliability,...
Suzanne Rivoire, Mehul A. Shah, Parthasarathy Rang...
SIGMOD
2007
ACM
106views Database» more  SIGMOD 2007»
16 years 7 months ago
Highly distributed XQuery with DXQ
Many modern applications, from Grid computing to RSS handling, need to support data processing in a distributed environment. Currently, most such applications are implemented usin...
Jérôme Siméon, Kristi Morton, ...