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BMCBI
2005
156views more  BMCBI 2005»
15 years 7 months ago
DynGO: a tool for visualizing and mining of Gene Ontology and its associations
Background: A large volume of data and information about genes and gene products has been stored in various molecular biology databases. A major challenge for knowledge discovery ...
Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
16 years 1 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
BMCBI
2006
137views more  BMCBI 2006»
15 years 7 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
BMCBI
2005
122views more  BMCBI 2005»
15 years 7 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
ACL
2009
15 years 5 months ago
Sentence diagram generation using dependency parsing
Dependency parsers show syntactic relations between words using a directed graph, but comparing dependency parsers is difficult because of differences in theoretical models. We de...
Elijah Mayfield