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» On Computable Tree Functions
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JCB
2006
107views more  JCB 2006»
15 years 7 months ago
Maximum Likelihood Molecular Clock Comb: Analytic Solutions
Maximum likelihood (ML) is increasingly used as an optimality criterion for selecting evolutionary trees, but finding the global optimum is a hard computational task. Because no g...
Benny Chor, Amit Khetan, Sagi Snir
BMCBI
2005
137views more  BMCBI 2005»
15 years 7 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
RECOMB
2005
Springer
16 years 7 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
TPDS
2008
80views more  TPDS 2008»
15 years 7 months ago
Scalable and Efficient End-to-End Network Topology Inference
To construct an efficient overlay network, the information of underlay is important. We consider using end-to-end measurement tools such as traceroute to infer the underlay topolog...
Xing Jin, Wanqing Tu, S.-H. Gary Chan

Book
376views
17 years 4 months ago
An Exploration of Random Processes for Engineers
"From an applications viewpoint, the main reason to study the subject of these notes is to help deal with the complexity of describing random, time-varying functions. A random...
Bruce Hajek