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SIGPLAN
2002
15 years 6 months ago
Pattern-matching and rewriting rules for group indexed data structures
In this paper, we present a new framework for the definition of various data structures (including trees and arrays) together with a generic language of filters enabling a rule-ba...
Jean-Louis Giavitto, Olivier Michel, Julien Cohen
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
16 years 13 days ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
IPPS
2003
IEEE
16 years 3 days ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002
NSDI
2010
15 years 8 months ago
ElasticTree: Saving Energy in Data Center Networks
Networks are a shared resource connecting critical IT infrastructure, and the general practice is to always leave them on. Yet, meaningful energy savings can result from improving...
Brandon Heller, Srinivasan Seetharaman, Priya Maha...
RECOMB
2012
Springer
13 years 9 months ago
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis
Abstract. Lateral gene transfer (LGT) is a common mechanism of nonvertical evolution where genetic material is transferred between two more or less distantly related organisms. It ...
Sebastien Roch, Sagi Snir