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» On Compressible Pairings and Their Computation
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BMCBI
2007
94views more  BMCBI 2007»
15 years 7 months ago
False positive reduction in protein-protein interaction predictions using gene ontology annotations
Background: Many crucial cellular operations such as metabolism, signalling, and regulations are based on protein-protein interactions. However, the lack of robust protein-protein...
Mahmood A. Mahdavi, Yen-Han Lin
DM
2010
127views more  DM 2010»
15 years 7 months ago
Enumeration and limit laws of dissections on a cylinder
We compute the generating function for triangulations on a cylinder, with the restriction that all vertices belong to its boundary and that the intersection of a pair of different ...
Juanjo Rué
BMCBI
2006
158views more  BMCBI 2006»
15 years 6 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
ARSCOM
2005
106views more  ARSCOM 2005»
15 years 6 months ago
Chromatic Equivalence of Generalized Ladder Graphs
A class of graphs called generalized ladder graphs is defined. A sufficient condition for pairs of these graphs to be chromatically equivalent is proven. In addition a formula for...
Stephen Guattery, Gary Haggard, Ronald C. Read
CORR
2011
Springer
159views Education» more  CORR 2011»
15 years 1 months ago
Geodesics in CAT(0) Cubical Complexes
We describe an algorithm to compute the geodesics in an arbitrary CAT(0) cubical complex. A key tool is a correspondence between cubical complexes of global non-positive curvature ...
Federico Ardila, Megan Owen, Seth Sullivant