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» On Compressibility of Protein Sequences
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CF
2005
ACM
15 years 8 months ago
Evaluation of extended dictionary-based static code compression schemes
This paper evaluates how much extended dictionary-based code compression techniques can reduce the static code size. In their simplest form, such methods statically identify ident...
Martin Thuresson, Per Stenström
RECOMB
2006
Springer
16 years 6 months ago
Domain Architecture in Homolog Identification
Homology identification is the first step for many genomic studies. Current methods, based on sequence comparison, can result in a substantial number of mis-assignments due to the ...
Nan Song, R. D. Sedgewick, Dannie Durand
FCCM
2007
IEEE
134views VLSI» more  FCCM 2007»
16 years 25 days ago
FPGA-accelerated seed generation in Mercury BLASTP
BLASTP is the most popular tool to perform comparative sequence analysis of protein sequences. An exponential increase in the size of protein sequence databases in recent years, h...
Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhle...
METMBS
2004
140views Mathematics» more  METMBS 2004»
15 years 7 months ago
New Techniques for Generation and Analysis of Evolutionary Trees
We introduce new distance measures for the construction and analysis of phylogenies, focusing on thioredoxin-fold proteins. Our distance measures for tree construction are based o...
Chang Wang, Stephen D. Scott, Qingping Tao, Dmitri...
IPPS
2007
IEEE
16 years 24 days ago
Protein Secondary Structure Prediction using Bayesian Inference method on Decision fusion algorithms
Prediction of protein secondary structure (alpha-helix, beta-sheet, coil) from primary sequence of amino acids is a very challenging task, and the problem has been approached from...
Somasheker Akkaladevi, Ajay K. Katangur