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» On Compressibility of Protein Sequences
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ISCAPDCS
2007
15 years 8 months ago
PARALLEL-TCOFFEE: A parallel multiple sequence aligner
In this paper we present a parallel implementation of T–Coffee — a widely used multiple sequence alignment package. Our software supports a majority of options provided by the...
Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Sriniv...
DCC
2007
IEEE
16 years 6 months ago
Improved Resolution Scalability for Bi-Level Image Data in JPEG2000
In this paper, we address issues concerning bilevel image compression using JPEG2000. While JPEG2000 is designed to compress both bilevel and continuous tone image data using a sin...
Rahul Raguram, Michael W. Marcellin, Ali Bilgin
BMCBI
2008
145views more  BMCBI 2008»
15 years 6 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
SISAP
2008
IEEE
166views Data Mining» more  SISAP 2008»
16 years 26 days ago
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...
Ahmet Sacan, Ismail Hakki Toroslu
ICDE
2007
IEEE
167views Database» more  ICDE 2007»
16 years 7 months ago
GString: A Novel Approach for Efficient Search in Graph Databases
Graphs are widely used for modeling complicated data, including chemical compounds, protein interactions, XML documents, and multimedia. Information retrieval against such data ca...
Haoliang Jiang, Haixun Wang, Philip S. Yu, Shuigen...