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» On Compressibility of Protein Sequences
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BIB
2006
141views more  BIB 2006»
15 years 6 months ago
Statistical significance in biological sequence analysis
One of the major goals of computational sequence analysis is to find sequence similarities, which could serve as evidence of structural and functional conservation, as well as of ...
Alexander Yu. Mitrophanov, Mark Borodovsky
IPPS
2006
IEEE
16 years 14 days ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan
BMCBI
2006
124views more  BMCBI 2006»
15 years 6 months ago
HybGFS: a hybrid method for genome-fingerprint scanning
Background: Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. H...
Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Nao...
KDD
2009
ACM
207views Data Mining» more  KDD 2009»
16 years 7 months ago
DynaMMo: mining and summarization of coevolving sequences with missing values
Given multiple time sequences with missing values, we propose DynaMMo which summarizes, compresses, and finds latent variables. The idea is to discover hidden variables and learn ...
Lei Li, James McCann, Nancy S. Pollard, Christos F...
BMCBI
2008
153views more  BMCBI 2008»
15 years 6 months ago
Improved general regression network for protein domain boundary prediction
Background: Protein domains present some of the most useful information that can be used to understand protein structure and functions. Recent research on protein domain boundary ...
Paul D. Yoo, Abdur R. Sikder, Bing Bing Zhou, Albe...