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» On Compressibility of Protein Sequences
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ICLP
2004
Springer
15 years 11 months ago
Protein Folding Simulation in CCP
A protein is identified by a finite sequence of aminoacids, each of them chosen from a set of 20 elements. The Protein Structure Prediction Problem is the problem of predicting t...
Alessandro Dal Palù, Agostino Dovier, Feder...
JMLR
2006
125views more  JMLR 2006»
15 years 6 months ago
Spam Filtering Using Statistical Data Compression Models
Spam filtering poses a special problem in text categorization, of which the defining characteristic is that filters face an active adversary, which constantly attempts to evade fi...
Andrej Bratko, Gordon V. Cormack, Bogdan Filipic, ...
BIOINFORMATICS
2010
87views more  BIOINFORMATICS 2010»
15 years 6 months ago
Improving protein secondary structure prediction using a simple k-mer model
Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...
NAR
1998
101views more  NAR 1998»
15 years 6 months ago
The PRINTS protein fingerprint database in its fifth year
PRINTS is a database of protein family ‘fingerprints’ offering a diagnostic resource for newly-determined sequences. By contrast with PROSITE, which uses single consensus expr...
Terri K. Attwood, Michael E. Beck, Darren R. Flowe...
BMCBI
2010
156views more  BMCBI 2010»
15 years 6 months ago
Mathematical model for empirically optimizing large scale production of soluble protein domains
Background: Efficient dissection of large proteins into their structural domains is critical for high throughput proteome analysis. So far, no study has focused on mathematically ...
Eisuke Chikayama, Atsushi Kurotani, Takanori Tanak...