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SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
14 years 9 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
CIBCB
2007
IEEE
16 years 23 days ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
GCB
1998
Springer
74views Biometrics» more  GCB 1998»
15 years 10 months ago
Removing Redundancy in SWISS-PROT and TrEMBL
Summary: One of the distinguishing criteria of the SWISSPROT protein sequence data bank is minimal redundancy.
Claire O'Donovan, Maria Jesus Martin, Eric Gl&eacu...
RECOMB
2002
Springer
16 years 6 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
ICC
2009
IEEE
116views Communications» more  ICC 2009»
15 years 4 months ago
Efficient Implementation of Binary Sequence Generator for WiMAX and WRAN on Programmable Digital Signal Processor
In this paper, an efficient design for implementing binary sequence generator on 32-bit instruction execution mode TI TMS320C6416 DSP is presented. The main goal is to achieve high...
Lok Tiing Tie, Ser Wah Oh, K. J. M. Kua