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2003
IEEE
15 years 12 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 12 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
IDEAS
2003
IEEE
122views Database» more  IDEAS 2003»
15 years 12 months ago
Preferred Repairs for Inconsistent Databases
The objective of this paper is to investigate the problems related to the extensional integration of information sources. In particular, we propose an approach for managing incons...
Sergio Greco, Cristina Sirangelo, Irina Trubitsyna...
IPPS
2003
IEEE
15 years 12 months ago
Constrained Component Deployment in Wide-Area Networks Using AI Planning Techniques
Component-based models represent a dominant trend in the construction of wide-area network applications, making possible the integration of diverse functionality contained in modu...
Tatiana Kichkaylo, Anca-Andreea Ivan, Vijay Karamc...
IPPS
2003
IEEE
15 years 12 months ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002
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