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POPL
2006
ACM
16 years 6 months ago
A fixpoint calculus for local and global program flows
We define a new fixpoint modal logic, the visibly pushdown ?-calculus (VP-?), as an extension of the modal ?-calculus. The models of this logic are execution trees of structured p...
Rajeev Alur, Swarat Chaudhuri, P. Madhusudan
POPL
2005
ACM
16 years 6 months ago
Permission accounting in separation logic
A lightweight logical approach to race-free sharing of heap storage between concurrent threads is described, based on the notion of permission to access. Transfer of permission be...
Richard Bornat, Cristiano Calcagno, Peter W. O'Hea...
RECOMB
2007
Springer
16 years 6 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2005
Springer
16 years 6 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
RECOMB
2005
Springer
16 years 6 months ago
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
Background: Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, ...
David Kulp, Manjunatha Jagalur
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