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GCB
2004
Springer
223views Biometrics» more  GCB 2004»
15 years 10 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
EUROPAR
2006
Springer
15 years 10 months ago
Specification of Inefficiency Patterns for MPI-2 One-Sided Communication
Abstract. Automatic performance analysis of parallel programs can be accomplished by scanning event traces of program execution for patterns representing inefficient behavior. The ...
Andrej Kühnal, Marc-André Hermanns, Be...
ICALP
2000
Springer
15 years 10 months ago
A Bound on the Capacity of Backoff and Acknowledgement-Based Protocols
We study contention-resolution protocols for multiple-access channels. We show that every backoff protocol is transient if the arrival rate, , is at least 0.42 and that the capaci...
Leslie Ann Goldberg, Mark Jerrum, Sampath Kannan, ...
TOOLS
1998
IEEE
15 years 10 months ago
Designing Persistent Object-Oriented Software Architectures
Conventional object-oriented analysis delivers a business object model, which is transformed during design into collaborating class clusters which implement the business model...
Paul Taylor
DAC
2010
ACM
15 years 10 months ago
On the costs and benefits of stochasticity in stream processing
With the end of clock-frequency scaling, parallelism has emerged as the key driver of chip-performance growth. Yet, several factors undermine efficient simultaneous use of onchip ...
Raj R. Nadakuditi, Igor L. Markov