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CF
2006
ACM
15 years 8 months ago
Intermediately executed code is the key to find refactorings that improve temporal data locality
The growing speed gap between memory and processor makes an efficient use of the cache ever more important to reach high performance. One of the most important ways to improve cac...
Kristof Beyls, Erik H. D'Hollander
197
Voted
BMCBI
2007
148views more  BMCBI 2007»
15 years 6 months ago
Computation of significance scores of unweighted Gene Set Enrichment Analyses
Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
Andreas Keller, Christina Backes, Hans-Peter Lenho...
BMCBI
2004
158views more  BMCBI 2004»
15 years 6 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
JSS
2002
90views more  JSS 2002»
15 years 6 months ago
Visual requirement representation
Most software development errors are caused by incorrect or ambiguous requirement specifications gathered during the requirement elicitation and analysis phase. For the past decad...
Deng-Jyi Chen, Wu-Chi Chen, Krishna M. Kavi
NAR
2010
194views more  NAR 2010»
15 years 1 months ago
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
Alternative splicing is an important mechanism for increasing protein diversity. However, its functional effects are largely unknown. Here, we present our new software workflow co...
Dorothea Emig, Nathan Salomonis, Jan Baumbach, Tho...