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BMCBI
2005
201views more  BMCBI 2005»
15 years 6 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
NLP
2000
15 years 10 months ago
Monte-Carlo Sampling for NP-Hard Maximization Problems in the Framework of Weighted Parsing
Abstract. The purpose of this paper is (1) to provide a theoretical justification for the use of Monte-Carlo sampling for approximate resolution of NP-hard maximization problems in...
Jean-Cédric Chappelier, Martin Rajman
BMCBI
2008
228views more  BMCBI 2008»
15 years 6 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
PPOPP
2009
ACM
16 years 7 months ago
OpenMP to GPGPU: a compiler framework for automatic translation and optimization
GPGPUs have recently emerged as powerful vehicles for generalpurpose high-performance computing. Although a new Compute Unified Device Architecture (CUDA) programming model from N...
Seyong Lee, Seung-Jai Min, Rudolf Eigenmann
FOCS
2004
IEEE
15 years 10 months ago
On the Streaming Model Augmented with a Sorting Primitive
The need to deal with massive data sets in many practical applications has led to a growing interest in computational models appropriate for large inputs. The most important quali...
Gagan Aggarwal, Mayur Datar, Sridhar Rajagopalan, ...