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» New constructions of SSPDs and their applications
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BMCBI
2008
138views more  BMCBI 2008»
15 years 6 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
BMCBI
2006
92views more  BMCBI 2006»
15 years 6 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2007
131views more  BMCBI 2007»
15 years 6 months ago
Prediction of peptides observable by mass spectrometry applied at the experimental set level
Background: When proteins are subjected to proteolytic digestion and analyzed by mass spectrometry using a method such as 2D LC MS/MS, only a portion of the proteotypic peptides a...
William S. Sanders, Susan M. Bridges, Fiona M. McC...
TVLSI
2008
108views more  TVLSI 2008»
15 years 6 months ago
Unified Convolutional/Turbo Decoder Design Using Tile-Based Timing Analysis of VA/MAP Kernel
To satisfy the advanced forward-error-correction (FEC) standards, in which the Convolutional code and Turbo code may co-exit, a prototype design of a unified Convolutional/Turbo de...
Fan-Min Li, Cheng-Hung Lin, An-Yeu Wu
VLSISP
2002
112views more  VLSISP 2002»
15 years 6 months ago
Minimizing Buffer Requirements under Rate-Optimal Schedule in Regular Dataflow Networks
Large-grain synchronous dataflow graphs or multi-rate graphs have the distinct feature that the nodes of the dataflow graph fire at different rates. Such multi-rate large-grain dat...
Ramaswamy Govindarajan, Guang R. Gao, Palash Desai