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RECOMB
2008
Springer
16 years 6 months ago
Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing
We report on a new algorithm for combining the information from several mass spectra of the same peptide. The algorithm automatically learns peptide fragmentation patterns, so that...
Ritendra Datta, Marshall W. Bern
RECOMB
2002
Springer
16 years 6 months ago
A Survey of Computational Methods for Determining Haplotypes
It is widely anticipated that the study of variation in the human genome will provide a means of predicting risk of a variety of complex diseases. Single nucleotide polymorphisms (...
Bjarni V. Halldórsson, Vineet Bafna, Nathan...
AB
2007
Springer
16 years 17 days ago
A Stochastic Pi Calculus for Concurrent Objects
We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π-calculus. It supports higher level modeling via multi-profile con...
Céline Kuttler, Cédric Lhoussaine, J...
PKDD
2005
Springer
105views Data Mining» more  PKDD 2005»
15 years 12 months ago
Protein Sequence Pattern Mining with Constraints
Considering the characteristics of biological sequence databases, which typically have a small alphabet, a very long length and a relative small size (several hundreds of sequences...
Pedro Gabriel Ferreira, Paulo J. Azevedo
ISMB
1994
15 years 7 months ago
Knowledge Discovery of Multilevel Protein Motifs
A new category of protein motif is introduced. This type of motif captures, in addition to global structure, the nested structure of its componentparts. Adata.set of four proteins...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...