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BMCBI
2006
95views more  BMCBI 2006»
15 years 6 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
RECOMB
2010
Springer
15 years 11 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
CPAIOR
2010
Springer
15 years 10 months ago
Solving Connected Subgraph Problems in Wildlife Conservation
Abstract. We investigate mathematical formulations and solution techniques for a variant of the Connected Subgraph Problem. Given a connected graph with costs and profits associat...
Bistra N. Dilkina, Carla P. Gomes
KDD
2009
ACM
180views Data Mining» more  KDD 2009»
15 years 10 months ago
Parallel community detection on large networks with propinquity dynamics
Graphs or networks can be used to model complex systems. Detecting community structures from large network data is a classic and challenging task. In this paper, we propose a nove...
Yuzhou Zhang, Jianyong Wang, Yi Wang, Lizhu Zhou
ICCV
2007
IEEE
16 years 10 days ago
Contextual Distance for Data Perception
Structural perception of data plays a fundamental role in pattern analysis and machine learning. In this paper, we develop a new structural perception of data based on local conte...
Deli Zhao, Zhouchen Lin, Xiaoou Tang